Sunday, June 06, 2010

The Annotated Origin of Species


In November of 1859, the
London publishing house of John Murray
brought out the first edition of what would become the most famous and important work of science of the 19th century: Charles Darwin's On the Origin of Species. The first edition of 1,250 copies sold out in one afternoon (first edition copies today fetch over a hundred thousand dollars on the rare book market) and was eventually reprinted over the next fifteen years in five increasingly popular editions. The success of the Origin catapulted Darwin from a relatively unknown specialist in the taxonomy of barnacles to the most famous naturalist of the 19th century and became the most widely read (and most controversial) science text of all time.

Many historians of biology credit the Origin with founding the modern science of biology. Hence, it is very curious that the first edition of the Origin lacks what most scholars expect to find in such influential and widely respected works. Unlike most other books of its kind — including Darwin's other famous books, The Voyage of the Beagle (first published in 1839) and The Descent of Man (first published in 1871) — the Origin has virtually none of the usual "machinery" of a scholarly work. Although Darwin cites the findings and opinions of hundreds of naturalists worldwide in the Origin, he does not provide any footnotes or written citations to their published works. The first edition of the Origin also does not include a bibliography nor any listing of published references. And, despite focusing on the most visual of the natural sciences, the Origin contains only one illustration, a hand–drawn diagram of the branching pattern of descent that Darwin proposed for his theory of descent with modification (his term for what we now refer to as "evolution").

The reason for this surprising lack of documentation is well known: Darwin had been scooped on his theory of natural selection by a fellow English naturalist, Alfred Russel Wallace. In April of 1858, Wallace sent Darwin a letter that included a brief essay "On the Tendency for Varieties to Depart Indefinitely from the Original Type", in which Wallace anticipated virtually all of the major concepts of Darwin's theory of evolution by natural selection. Darwin had been working on his theory for over two decades, and had been writing the book that would eventually be published as the Origin for at least five years when he received Wallace's letter. Anxious to preserve his priority as the discoverer of natural selection and urged on to do so by his friends and fellow naturalists, Darwin rushed what he considered to be an "abstract" of his ideas into print in November of 1859. This "brief abstract", published without footnotes, illustrations, or bibliography, was the first edition of the Origin of Species by Means of Natural Selection.

The first edition of the Origin was a masterwork and is still published in its original form, without footnotes, illustrations, and bibliography. Reading it, one can still get a taste of the overwhelming scholarship with which Darwin supported what he called his "long argument" for descent with modification. However, to really appreciate how much of the science of natural history Darwin wove into his argument, one really needs to know what Darwin's sources were and how they were related to each other.

Presenting these sources and showing how Darwin marshaled them in his defense of his theory is the heart of James Costa's brilliant annotation of Darwin's classic, The Annotated Origin, published by Belknap Press of Harvard University Press. Brought out in celebration of the 150th anniversary of the publication of first edition of the Origin, Costa's annotated version more than compensates for the "missing" material in Darwin's original. The introduction to The Annotated Origin alone is worth the price of the book. In it, Costa presents a lightning biography of Darwin and a nuanced exploration of the reasons for his rush to publish in 1859. It also contains a reader's guide to the Origin, a book that is often difficult for modern readers who are unaccustomed to the density of Victorian prose. Costa then analyzes and annotates virtually every page of the Origin, including the title page, in which he provides a brief history of Darwin's illustrious publisher, John Murray, and his decision to print only 1,250 copies of what would eventually become his best-selling and most famous publication.

Costa's annotations run the gamut from personal anecdotes to hard-science references. He weaves together Darwin's own telegraphic notes in his unpublished notebooks, his correspondence, his other published works, and his autobiography, providing the reader with a wealth of information and insight. Tracking down each line of evidence becomes a kind of "exploration" in itself. One can follow threads of evidence that elucidate Darwin's views about nature, science, his fellow naturalists, and even such "taboo" subjects (at least in the Victorian era) as sex and the intimate details of family life.

Costa's annotations also provide a detailed framework for Darwin's argument, showing how the various explanations and examples are marshaled in such a way as to support Darwin's underlying argument for "descent with modification by means of natural selection." As just one example, consider Costa's annotations to the section of pigeon breeding in the first chapter of the Origin ("Variation Under Domestication"). Naïve readers of this chapter are sometimes puzzled by Darwin's emphasis on pigeon breeding and its relationship to his theory. But, as Costa points out, "[p]igeons provided a microcosm of Darwin's model of selection, as well as valuable data on development, correlation of traits, and reversion." Like so many of his Victorian contemporaries, Darwin raised pigeons at his country estate at Down House in Kent, and conducted dozens of breeding experiments to test his theories. Darwin pointed out that all of the various breeds of pigeons could be shown to have descended from the wild rock pigeon (Columba livia) by a process that we now refer to as artificial selection. Darwin constructed an argument by analogy that natural selection followed the same rules as artificial selection. And, since so many of his contemporaries (and potential readers) were also pigeon fanciers, he could be reasonably confident that they would be able to follow his argument without extensive explanation or citations of obscure references to the scientific literature.

Reading the first edition of Darwin's Origin of Species is a revelation. One catches the threads of Darwin's argument and follows his reasoning through to his startling (and sometimes troubling) conclusions. James Costa's masterful annotation of the Origin does much more. It supplies the scholarly apparatus that the first edition lacked and provides a coherent and comprehensive background for Darwin's arguments, as well as many fascinating insights into Darwin's personality, thought processes and research methods. No other scientist has been as exhaustively analyzed as Darwin, and no other published work of science has been as widely criticized or praised as the Origin of Species. Reading James Costa's Annotated Origin provides an even deeper appreciation for Darwin's achievement and its impact on science and society.

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As always, comments, criticisms, and suggestions are warmly welcomed!

--Allen

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Tuesday, November 24, 2009

The Longest Running Failed Prediction in Creationism


AUTHOR: G.R. Morton

SOURCE: Answers in Science

COMMENTARY: Allen MacNeill

First, today is the 150th anniversary of the original publication of Charles Darwin's Origin of Species. So many people have written about this event that it would be superfluous for me to write about it here. However, some of what has been written about the Origin lately, mostly by creationists and supporters of "intelligent design", is that Darwin's theory of evolution by natural selection is "crumbling" and will soon be "dead".

Admittedly, I have written recently that the "modern evolutionary synthesis" is dead (see here for more), but in doing so I have taken pains to point out that the theory of evolution itself is most assuredly not dead. On the contrary, it is very much alive. Indeed, it has never been more vigorous than it is today.

But that's not what the creationists are saying. What they're saying (or trying to say) is that the whole concept of evolution itself is dead: the Earth and everything on it was created a relatively short time ago, and even if life on Earth has changed (a little), all of that change has been guided by the deity of the Abrahamic religions (Judaism, Christianity, Islam, Mormonism, etc.) Indeed, just this morning a new podcast was launched at the website of the Discovery Institute, in which neo-Paleyist and ID creationist John West asserts once again that "Darwinism is dead".

Is this news? And is it new? How long have creationists been predicting the demise of Darwin's theory of evolution? Apparently, they've been doing so since a few decades before Darwin published it. G. R. Morton has compiled a short list of quote from creationists predicting the impending overthrow of the theory of evolution (you can read it here). He introduces his anthology of science denialism with this:

In recent reading of [Dr. William] Dembski and other ID proponents I saw them make a claim which has been made for over 40 years. This claim is one that the young-earthers have been making. The claim is that evolution (or major supporting concepts for it) is increasingly being abandoned by scientists, or is about to fall. This claim has many forms and has been made for over 162 years. This is a compilation of the claims over time. The purpose of this compilation is two-fold. First, it is to show that the claim has been made for a long, long time. Secondly, it is to show that entire careers have passed without seeing any of this movement away from evolution. Third, it is to show that the creationists are merely making these statements for the purpose of keeping hope alive that they are making progress towards their goal. In point of fact, no such progress is being made as anyone who has watched this area for the last 40 years can testify. The claim is false as history and present-day events show, yet that doesn't stop anyone wanting to sell books from making that claim.

Morton's quotations from creationists begins with a quote dating to 1825, 34 years before Darwin published the Origin of Species. Apparently, what many historians have asserted was true: that the idea of evolution was "in the air" in the mid-19th century, and that Darwin simply codified and provided evidence for an idea that was already becoming generally well-known and at least partially accepted. The fact that Alfred Russell Wallace came up with the same mechanism that Darwin did for descent with modification — natural selection — is further evidence for the idea that evolution was "in the air" at the time.

It still is, and even moreso. Not only has the theory of evolution not "crumbled", it is currently undergoing its most rapid expansion since 1859. Darwin's original theory was limited strictly to biological evolution, but now his theory is being extended into astrophysics, geology, economics, psychology, sociology, and even literature and art history. It is this tremendous success that upsets the opponents of Darwin's theory, and that impels them (in the face of overwhelming evidence to the contrary) that the most widely accepted, most generally applicable, and most analytically powerful theory in all of science is on its way out.

In other words (and true to their creationist roots), they stare reality in the face and deny it.

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As always, comments, criticisms, and suggestions are warmly welcomed!

--Allen

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Friday, November 20, 2009

Comfortable Creationists Wimp Out at Cornell


Many people have recently heard about how creationist and televangelist Ray Comfort has been planning to distribute 170,000 copies of Charles Darwin's Origin of Species at the 100 top colleges and universities in America.

Well, the appointed day (19 November) for Ray's distribution of the Origin came and went, but apparently no creationists showed up at Cornell to pass out Ray's "abridged" copy of the Origin of Species with Ray's laughably mendacious introduction. I really wanted to get a copy, eagerly pressed into my grasp by the hot little hands of a freshly scrubbed creationist, but after checking every likely location — from Ho Plaza in front of the Straight (where there were a few empty folding tables, sitting forlornly in the rain) to the plaza between Olin and Uris libraries (where a few damp smokers contemplated "The Song of the Vowels") to Trillium (where Cornell's elite meet to eat) to Mann Library (the second largest agriculture and biology library in the world...where is the first, exactly?) to Appell Commons (where you can work up a sweat before downing your stir fry)...nada, nobody, zip, just grey sky and freezing rain. And so my quest for another artifact from the culture wars went unsatisfied...

Apparently, Ray got worried that people like me would make things "unComfortable" for his minions, so he secretly ordered them to go out a day early. But, this is the Age of Twitter, and so a lot of Godless Evilutionists were out in force on Wednesday...but, no Comfortable creationists then either. Looks like I picked up that bunch of bananas for nothing — *sigh*

By the way, Ray Comfort has apparently been making a career out of lying lately, asserting that his version of the Origin would be passed out at Cornell yesterday, and that his bastardized version would be available in its entirety. Although I didn't get my copy, I have been informed by people at other academic institutions who did that, on the contrary, he's apparently cut out precisely those chapters that have proven most inconvenient for creationists in the past. And, he's added a fifty-page "introduction" that's filled with laughably inaccurate so-called "arguments" against the content of Darwin's masterpiece.

Furthermore, his apparently false claim that he was printing 170,000 copies of his version of the Origin was apparently intended to push his version to the top of Amazon.com's search results for the Origin of Species, where members of the uninformed public who were interested in reading Darwin's masterpiece during this bicentennial year (it's the 200th anniversary of Darwin's birth and the 150th anniversary of the first publication of the Origin of Species) would innocently buy his bastardized version with his mendacious introduction. A clever public relations gambit — gaming Amazon.com's popularity algorithm — but I guess he forgot about the reviewer's comments at Amazon, where his lying and propaganda techniques and public relations tricks have been exposed by people more interested in the truth than making money by shilling for Jesus (who would have been horrified by Ray's tactics, and probably by his theology as well).

So, why did Ray's minions wimp out at Cornell? Maybe because Cornell is well-known for being the Ivy League university most dedicated to the principles of modern science, including evolutionary biology — we've got the best department of ecology and evolutionary biology in the world, and Cornellians (including our presidents) have been well-known for speaking out against bad science since the beginning.

Or maybe because Ray's followers were "discomfited" by our ever-present November drizzle...

...whatever.

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As always, comments, criticisms, and suggestions are warmly welcomed!

--Allen

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Thursday, November 19, 2009

The Modern Synthesis is Dead - Long Live the Evolving Synthesis!


It has been almost exactly a century and a half since Darwin's Origin of Species was first published, and half a century since the conference at the University of Chicago where the "triumph" of the "modern evolutionary synthesis" was celebrated. So, isn't it a little odd that some well-respected scientists and historians of science are proclaiming in this celebratory year that the modern evolutionary synthesis is dead?

For example, Eugene Koonin, senior investigator at the National Center for Biotechnology Information, National Library of Medicine, and National Institutes of Health in Bethesda, Maryland, has published two essays on the current status of the "modern evolutionary synthesis":
The Origin at 150: Is a new evolutionary synthesis in sight?
Trends in Genetics, 25(11), November 2009, pp. 473-475.

Abstract: The 200th anniversary of Charles Darwin and the 150th jubilee of the On the Origin of Species could prompt a new look at evolutionary biology. The 1959 Origin centennial was marked by the consolidation of the modern synthesis. The edifice of the modern synthesis has crumbled, apparently, beyond repair. The hallmark of the Darwinian discourse of 2009 is the plurality of evolutionary processes and patterns. Nevertheless, glimpses of a new synthesis might be discernible in emerging universals of evolution.

and
Darwinian evolution in the light of genomics.
Nucleic Acids Research, 37(4), 2009, pp. 1011-1034.

ABSTRACT: Comparative genomics and systems biology offer unprecedented opportunities for testing central tenets of evolutionary biology formulated by Darwin in the Origin of Species in 1859 and expanded in the Modern Synthesis 100 years later. Evolutionary-genomic studies show that natural selection is only one of the forces that shape genome evolution and is not quantitatively dominant, whereas non-adaptive processes are much more prominent than previously suspected. Major contributions of horizontal gene transfer and diverse selfish genetic elements to genome evolution undermine the Tree of Life concept. An adequate depiction of evolution requires the more complex concept of a network or 'forest' of life. There is no consistent tendency of evolution towards increased genomic complexity, and when complexity increases, this appears to be a nonadaptive consequence of evolution under weak purifying selection rather than an adaptation. Several universals of genome evolution were discovered including the invariant distributions of evolutionary rates among orthologous genes from diverse genomes and of paralogous gene family sizes, and the negative correlation between gene expression level and sequence evolution rate. Simple, non-adaptive models of evolution explain some of these universals, suggesting that a new synthesis of evolutionary biology might become feasible in a not so remote future.

A big deal, right? Well, not really. Will Provine and I have been saying that “the modern evolutionary synthesis is dead” for years. Indeed, Will Provine coined the phrase “the hardening of the synthesis” to describe the narrowing of focus in evolutionary theory during the first half of the 20th century to concepts entirely reducible to mathematical models, especially theoretical population genetics.

Ironically, Dr. John Sanford and Dr. William Dembski (among others in the ID camp) have not moved beyond this narrow focus on theoretical population genetics, and so have apparently missed the fact that evolutionary biology has evolved far beyond the narrow theoretical focus of the mid-20th century. Some ID supporters have also suggested that Dr. Koonin might be taking a “big career risk” in stating the obvious. I don't think so. On the contrary, what Dr. Koonin has pointed out is that evolutionary biology today is broader, more generally applicable, and less narrowly focused than at any time since the publication of the Origin of Species 150 years ago. Being an evolutionary biologist today is like being a physicist in 1905 — a whole new world of theoretical and practical empirical research is opening up, with new discoveries being made every day.

As just one example, Kyoto-prize-winning evolutionary biologists Peter and Rosemary Grant have reported on something that Darwin could only speculate about: the systematic empirical documentation of the “origin” of a new species (reported here yesterday). Creationists have of course moved the goalposts, arguing that they accepted all along that new species could arise from existing ones, it’s just microevolution, which of course everyone accepts. This, despite the fact that speciation has always been considered to be the first (and perhaps most important) stage in macroevolution, and that less than two decades ago creationists were confidently stating that “true” speciation had not only never been observed, it couldn’t ever be observed because it can’t happen.

Now the leaders of the ID movement — people like Dr. Michael Behe and Dr. William Dembski — publicly state that they fully accept that descent with modification from common ancestors (i.e. evolution) has happened, that microevolution (i.e. natural selection, sexual selection, and genetic drift) are also fully supported by the evidence, and that the “real” focus of disagreement is over the “engines of variation” that produce the raw material upon which the “engines of evolution” operate. They’ve come a long way, but they’ve missed the parade by a couple of decades. So it goes…

I would say that Dr. Koonin's essays on where evolutionary biology is today are quite close to the the mark. The concept of natural selection as the foundation of evolutionary change has been largely superseded, mostly through the work of Motoo Kimura, Tomoko Ohta, and others, who have shown both theoretically and empirically that natural selection has little or no effect on the vast majority of the genomes of most living organisms.

However, ID supporters should find this sea change in evolutionary biology to be cold comfort. The overall effect of the advances in our understanding of how genomes and phenotypes change over time has had the same effect on evolutionary theory that the rise of quantum mechanics had on classical physics. Einstein famously asserted that “God does not play dice”, but a century of physics research has shown him to be more wrong about how the universe works at the quantum level than ever.

The same is true for the “evolving synthesis”. Rather than revert to a neo-Paleyan paradigm (as proposed by Behe, Dembski, and their supporters), evolutionary biology has gone in the opposite direction, the same direction that quantum mechanics has taken. According to the “modern synthesis” of the last century, the genome was “homeostatic”, “organized”, and “regulated” primarily by natural selection. Sure there were purely random processes also going on (such as genetic drift), but most evolutionary change was both adaptive and coherent over time.

Here's what Dr. Koonin writes (see above):
"There is no consistent tendency of evolution towards increased genomic complexity, and when complexity increases, this appears to be a nonadaptive consequence of evolution under weak purifying selection rather than an adaptation."

Kimura, Ohta, Jukes, and Crow dropped a monkey wrench into the "engine" at the heart of the modern synthesis — natural selection — and then Gould and Lewontin finished the job with their famous paper on “the spandrels of San Marco and the Panglossian paradigm”. The rise of evo-devo over the past two decades has laid the groundwork for a completely new and empirically testable theory of macroevolution, a theory that is currently facilitating exponential progress in our understanding of how major evolutionary transitions happen. And iconoclasts like Lynn Margulis, Eva Jablonka, Marian Lamb, Mary Jane West-Eberhard, and David Sloan Wilson are rapidly overturning our understanding of how evolutionary change happens at all levels, and how it is inherited.

So, as I have said many times before, when ID supporters set their sights on “neo-Darwinism” as a target for criticism, they set their sights on a model that has been all but abandoned. The carnival has moved on and ID supporters are fighting battles that evolutionary biologists left behind a half century and more ago.

And so, on this 150th anniversary of the publication of Darwin's Origin of Species, evolutionary biologists can raise a frosty glass and say


The modern synthesis is dead — long live the evolving synthesis!


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As always, comments, criticisms, and suggestions are warmly welcomed!

--Allen

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Wednesday, November 11, 2009

Books in Celebration of the 150th Anniversary of the Origin of Species


2009 marks several important anniversaries in the science of evolutionary biology. Perhaps the two most important are the 200th anniversary of the birth of Charles Darwin and the 150th anniversary of the publication of his most important book, On the Origin of Species, originally published in November of 1859. Scientific societies around the world are celebrating these two events, with “Darwin Day” observances at hundreds of colleges, universities, and museums, including Cornell University and the Museum of the Earth at the Paleontological Research Institution in Ithaca, New York.

Publishers are also celebrating these two anniversaries, bringing out a flood of books on Darwin and evolution. There isn’t space in this blogpost to note all of these publications, but we can mention some of the most noteworthy and relevant of these publications. Here is an annotated list of some of the best and most comprehensive publications that have come out recently, celebrating the life and work of Charles Darwin and his theory of evolution by natural selection. The full publication information for each work is included in this list, followed by a brief paragraph describing its contents.

DARWIN'S BOOKS (in print)
Darwin, Charles (Edward O. Wilson, editor) (2005) From So Simple a Beginning: Darwin's Four Great Books. W.W. Norton & Co.: New York, NY, ISBN 0393061345 (hardcover, $39.95), 1706 pages. Available here.
Perhaps the best way to celebrate Darwin’s life and work is to read his most important and influential books. In preparation for the Darwin bicentennial several publishers have brought out various versions of his books. This one is the best, not only because it includes his four most influential publications, but also because the editor, evolutionary biologist Edward O. Wilson, provides a brief but illuminating introduction to each one. Wilson places Darwin’s work in its historical and scientific context, and shows how each of his four great books laid the groundwork for the modern science of biology. If you only have time for one of these books, let this compendium be the one you read this year.


Darwin, Charles (James T. Costa, editor) (2009) The Annotated Origin: A Facsimile of the First Edition of On the Origin of Species. Belknap Press of Harvard University Press: Cambridge, MA, ISBN 0674032810 (hardcover, $35.00), 576 pages. Available here.
Darwin didn’t originally intend to publish the book we now know as the Origin of Species. He was working on a much longer multi-volume work that he intended to call Natural Selection, and rushed to publish an “abstract” of this work in 1859 to forestall losing his priority for the idea to Alfred Russell Wallace. As a consequence, the Origin of Species has no footnotes, endnotes, nor bibliography. This version of the Origin makes up for that lack. Ably edited by James Costa, The Annotated Origin contains many of the annotations that the original Origin of Species lacked, and provides the reader with a comprehensive grounding in the natural history that Darwin marshaled in support of his revolutionary theory.


Darwin, Charles (David Quammen, editor) (2008) On the Origin of Species: The Illustrated Edition. Sterling Publishers: New York, NY, ISBN 1402756399 (hardcover, $35.00), 560 pages. Available here.
Darwin rushed to publish the Origin of Species, and included only one technical illustration in the first edition. This lack of illustrations has been rectified in David Quammen’s beautifully illustrated version of the Origin. Perhaps best known for his masterful book on island biogeography and extinction, The Song of the Dodo, Quammen has chosen a huge selection of images that illuminate Darwin’s theory in ways that Darwin himself would have found both fascinating and extremely valuable for a deeper understanding of his theory.

DARWIN'S BOOKS (online)

The Internet has provided readers and scholars today with an unparalleled opportunity to study the works of Darwin online. By far the best of these electronic resources is a website initiated and maintained by John Van Whye and his colleagues in England. Available online at http://darwin-online.org.uk/, The Complete Works of Charles Darwin includes not only all of Darwin’s books (available in all of their various editions), but also photographic facsimiles of these works side-by-side with searchable full text versions, plus all of Darwin’s scientific publications and a massive and growing collection of his voluminous correspondence. Here is a sampling:

Darwin, Charles (1845) Journal of Researches into the Natural History and Geology of the Countries Visited During the Voyage of H.M.S. Beagle Round the World, Under the Command of Capt. Fitz Roy, R.N. 2d edition. John Murray: London, UK, 536 pages. Text and images available here.
This was Darwin’s first and most popular book for the general public, establishing him as the premier naturalist in England at the time of its publication. Continuously in print since 1845, the Voyage of the Beagle (as it is most often referred to) is both a marvelous compendium of natural history and a fascinating journal of a voyage of discovery almost unparalleled in the literature of science.


Darwin, Charles (1859) On the Origin of Species by Means of Natural Selection, or the Preservation of Favoured Races in the Struggle for Life. John Murray: London, UK, 522 pages. Text and images available here.
Darwin’s most important book, and perhaps the most important book ever published in the science of biology. Indeed, a strong argument could be made that this book single-handedly founded the modern science of biology. This online edition juxtaposes the text of the Origin with photographs of the corresponding pages from the first edition.


Darwin, Charles (1871) The Descent of Man, and Selection in Relation to Sex. John Murray: London, UK, 424 pages. Text and images available here.
Darwin’s second most important book, and perhaps the most controversial of his published works, the Descent of Man (as it is most often referred to) contains Darwin’s proposal that humans have evolved from “lower” primates, and a detailed exploration of what Darwin believed to be the most important mechanism in the evolution of humans: sexual selection. Darwin also speculates on the evolutionary origin of such uniquely human traits as art, language, and morality.


Darwin, Charles (1871) The Expression of the Emotions in Man and Animals. John Murray: London, UK, 374 pages. Text and images available here.
One of Darwin’s lesser-known books, but no less important in its own way, The Expression of the Emotions in Man and Animals is often credited with founding the modern science of animal behavior. In it, Darwin explored the biological basis for the expression of emotions in humans and other animals, with detailed examples (many with accompanying photographs) that show how human emotions are most probably derived from the emotions of other “lower” animals, including dogs as well as monkeys and other primates.

DARWIN'S LIFE AND WORK (adults/general)

Many people (including many evolutionary biologists) not only have never read Darwin's books, but also do not know how Darwin came to write them. Furthermore, opponents of Darwin's theories often portray Darwin's life and personal beliefs in as negative a light as possible, in an attempt to discredit his theories. Perhaps the best antidotes to both of these deficiencies are the books listed here, which together provide a comprehensive view of Darwin's life and work. Most of them are written for non-scientists, and all of them provide a fascinating glimpse into the work of the founder of the science of biology.

Browne, Janet (1996) Charles Darwin: A Biography, Volume 1: Voyaging. Princeton University Press: Princeton, NJ, ISBN 0691026068 (paperback, $25.95), 622 pages. Available here.
Although not explicitly published in celebration of the Darwin bicentennial, Janet Browne’s two-volume biography of Darwin is widely recognized as the premier biography of the founder of evolutionary biology. This first volume covers Darwin’s youth and early career, up to the completion of the voyage of HMS Beagle and the germination of his theory of evolution by natural selection. Using the extensive collection of Darwin’s correspondence along with personal papers and those of his family and scientific associates, Browne draws a detailed and sometimes surprising portrait of the founder of the most comprehensive and controversial theory in the natural sciences.


Browne, Janet (2003) Charles Darwin: A Biography, Volume 2: The Power of Place. Princeton University Press: Princeton, NJ, ISBN 0691114390 (paperback, $25.95), 600 pages. Available here.
In this second volume of Janet Browne’s two-volume biography of Darwin, Janet Browne explores the origin of the Origin of Species and Darwin’s other ground breaking and revolutionary works. Unlike some of Darwin’s other biographers, Browne gets most of the science right in her biography, and illuminates Darwin’s ideas in light of his detailed work in natural history. She also provides insights into Darwin’s personality, including his much-noted reclusive nature, and shows how his scientific work and ideas were influenced by events in his private life.


Darwin, Charles (Nora Barlow, editor) (1993) The Autobiography of Charles Darwin: 1809-1882. W.W. Norton & Co.: New York, NY, ISBN 0393310698 (paperback, $14.95), 224 pages. Available here.
Although Darwin wrote an autobiography, he never intended it to be a comprehensive history of his life or his ideas. Rather, he did it almost on a lark, as a kind of “gift” to the members of his family and closest friends. Despite this, his autobiography provides some fascinating insights into his personality, and especially his views on art, literature, religion, ethics, and philosophy. This edition includes autobiographical material that was suppressed by Darwin’s widow and son, and should be considered to be the definitive edition.


Darwin, Charles (Gordon Chancellor & John Van Wyhe, editors) (2009) Charles Darwin’s Notebooks from the Voyage of the Beagle. Cambridge University Press: New York, NY, ISBN 0521517575 (hardcover, $150.00), 650 pages. Available here.
This is an expensive, but absolutely invaluable publication, brought out by Cambridge University Press as part of this year’s bicentennial celebration and edited by Gordon Chancellor and John Van Whye (the same John Whye who maintains the complete works of Darwin online). It contains the entirety of Darwin’s handwritten journals of the voyage of HMS Beagle, written during the voyage. In it one can trace the development of Darwin’s revolutionary ideas as they first occurred to him, and see how the events of the voyage laid the groundwork for his revolutionary theories. This is a must-have edition for anyone who wants to understand how and when the Darwinian revolution began.


Desmond, Adrian & Moore, James (2009) Darwin's Sacred Cause: How a Hatred of Slavery Shaped Darwin's Views on Human Evolution. Houghton Mifflin Harcourt: New York, NY, ISBN 0547055269 (hardcover, $14.95), 448 pages. Available here.
Charles Darwin was born on February 12, 1809, the same day as Abraham Lincoln. This propinquity of origins is all the more notable when one realizes that Darwin and his family were staunch abolitionists. Darwin himself tells how he became horrified by the institution of slavery while on the voyage of HMS Beagle.

Desmond and Moore, whose 1994 biography of Darwin (Darwin: The Life of a Tormented Evolutionist, available here) is widely recognized as one of the best biographies of Darwin, have in this volume dug deeper into Darwin’s personal history, showing how his views on slavery and its abolition helped shape his views on the evolution of humans, as outlined in his Descent of Man.


McCalman, Iain (2009) Darwin's Armada: Four Voyages and the Battle for the Theory of Evolution. W.W. Norton & Co.: New York, NY, ISBN 0393068145 (hardcover, $29.95), 432 pages. Available here.
Although perhaps the best known, Darwin’s round-the-world voyage aboard HMS Beagle was not by any means the only such voyage of discovery in the 19th century. Three of Darwin’s closest friends and collaborators in evolutionary biology — botanist Joseph Hooker, zoologist Thomas Henry Huxley, and professional collector and naturalist Alfred Russell Wallace — all participated in similar voyages, and all contributed to Darwin’s theories. McCalman describes all four voyages, and shows how the insights and information about natural history gained by these four great naturalists provided the foundation for the science of evolutionary biology in the 19th and early 20th centuries.


Quammen, David) (2007) The Reluctant Mr. Darwin: An Intimate Portrait of Charles Darwin and the Making of His Theory of Evolution. Atlas Books: New York, NY, ISBN 039332995X (paperback, $35.00), 304 pages. Available here.
Quammen’s biography of Darwin’s personal origin of the Origin is a perfect companion to Janet Browne’s two-volume biography of Darwin. Focusing on the period in Darwin’s life leading up to the original publication of the Origin, Quammen shows how Darwin’s personality and early education predisposed him to the intellectual and emotional labor that resulted in the publication of the Origin and its reception by the scientific community.

DARWIN'S LIFE AND WORK (children/school)

All too often people think that the work of great scientists such as Charles Darwin is only accessible to adults, especially scientists. Here is a brief selection of books for children, all published during this bicentennial year, which present Darwin and his work in a way that anyone, including young children, can understand and appreciate.

Heiligman, Deborah (2009) Charles and Emma: The Darwins' Leap of Faith. Henry Holt and Co.: New York, NY, ISBN 0805087214 (hardcover, $18.95), 272 pages. Available here.
Heiligman’s biography of Charles and Emma Darwin begins with Charles drawing up a list of the pros and cons of marriage to his first cousin, Emma. His decision to marry her set in motion an emotional odyssey for Charles and Emma, who had very different views of religion. Charles’ theory of evolution threatened Emma’s deep religious belief, and forced Darwin to thoroughly document his views before publishing them. This sympathetic rendering of their happy, though sometimes turbulent, marriage is a wonderful introduction to the real life of a famous scientist, one that young adults will find particularly relevant to their own lives.


Lasky, Kathryn (2009) One Beetle Too Many: The Extraordinary Adventures of Charles Darwin. Candlewick Press: Somerville, MA, ISBN 076361436X (hardcover, $17.99), 48 pages. Available here.
Lasky’s copiously illustrated account of Darwin’s life and work, focusing especially on his adventures while on the voyage of HMS Beagle, gives younger readers an engaging look at the work of the founder of the theory of evolution by natural selection. Lasky does not shy away from Darwin’s views on evolution and religion, presenting them in Darwin’s own words. The illustrations are particularly charming, rendered in various media in a quirky and engaging style.

McGinty, Alice B. & Azarian, Mary (2009) Darwin, with Glimpses into his Private Journal and Letters. Houghton Mifflin Books for Children: New York, NY, ISBN 0618995315 (hardcover, $18.00), 48 pages. Available here.

Another illustrated account of Darwin’s life and work, this time covering his childhood, his adventures while on the voyage of HMS Beagle, and the subsequent development of his theory of evolution by natural selection. gives younger readers an engaging look at the work of the founder of the theory of evolution by natural selection. Illustrated with woodcuts and watercolor, McGinty and Azarian’s biographical history also touches on Darwin’s views on religion and philosophy in a way that is accessible to younger readers.


Schanzer, Rosalyn (2009) What Darwin Saw: The Journey That Changed the World. National Geographic Children's Books: Des Moines, IA, ISBN 1426303963 (hardcover, $18.00), 48 pages. Available here.
Schanzer’s illustrated account of Darwin’s voyage of HMS Beagle is more limited in scope than the others in this list, but succeeds in presenting Darwin’s natural history investigations in an engaging (and sometimes humorous) way. More like a graphic novel than a standard biography (complete with cartoon-like illustrations and speech balloons), Schanzer presents selected observations that led Darwin to his theory of evolution. Unlike the other three books for younger readers in this list, Schanzer avoids discussion of Darwin’s views on religion and philosophy, sticky strictly to the natural history of his historic voyage and the science that it inspired.

In addition to the books listed and reviewed here, those who are interested in the life and works of Charles Darwin can search Amazon.com, where most of the books listed above can be browsed, along with many others published in connection with the Darwin bicentennial. Books on the subject of evolution are listed here, including books both supportive of Darwin’s theory and critical of it.

I hope this list provides you with some ideas of how to celebrate Darwin's life and work by learning more about it.

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As always, comments, criticisms, and suggestions are warmly welcomed!

--Allen

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Sunday, November 08, 2009

The Darwinian Revolutions Video Series


The Darwinian Revolutions

An online video lecture series
in honor of the 150th anniversary
of the original publication of
Charles Darwin's Origin of Species


Produced by:
The Cybertower at Cornell University

Written, directed and narrated by:
Allen MacNeill, Senior Lecturer
The Biology Learning Skills Center
Ecology & Evolutionary Biology

Videography by:
Dina Banning

Sound Engineering by:
Colbert McClennan

Technical Direction by:
Becky Lane

Videotaped at:
The Museum of the Earth
The Paleontological Research Institution
Ithaca, New York

Voiceover Narration Recorded at:
Fall Creek Studios
1201 North Tioga Street
Ithaca, New York

Images Obtained at:
WikiMedia Commons
Stebbins/Simpson/Dobzhanky photo credit: Martin Tracey

Galapagos Video Credit:
Prof. William Provine

It's finally done! After more than a year of meetings, writing, image acquisition, videotaping, sound recording, editing, revising, captioning, and (most of all) thinking, our video series on the Darwinian revolutions is now online!

This series of six online videos is a brief introduction to Darwin's theory of evolution by natural selection and its implications. Here is a brief synopsis of the six episodes (click on each episode title to go to the linked video):


Episode One: Darwinian Revolutions
We begin with an overview of the series, which has been released to coincide with the 150th anniversary of the publication of Darwin's Origin of Species. Darwin's theory of evolution by natural selection revolutionized both the biological sciences and our understanding of ourselves and the world around us. In this episode we learn that Darwin's theory has itself evolved in the 150 years since it was published. We also learn that Darwin actually presented two theories:
• a theory of descent with modification from common ancestors, and
• the theory of natural selection, Darwin's mechanism for evolution.


Episode Two: Evolutionary Ancestors
Beginning with an overview of Darwin's predecessors, we learn how the idea of evolution by natural means alone goes back more than two thousand years, to ancient Greece and Rome. Democritus of Abdera first proposed the "ground rules" for naturalist evolution, which were later extended by the Roman poet and philosopher, Lucretius. However, these early naturalistic theories were eclipsed for almost two millennia by the ideas of Plato and Aristotle.


Episode Three: Lamarck's Theory
In the 19th century, Jean Baptiste Lamarck set the stage for Darwin's monumental achievement with his Philosophie Zoologique (published in 1809), which advanced a theory of evolution by means of the inheritance of acquired characteristics. Lamarck's theory was the first theory of evolution to include a testable mechanism for evolutionary change — the inheritance of acquired characteristics — and provides a useful comparison with Darwin's theory.


Episode Four: One Long Argument
Darwin, whose academic training at Cambridge University was in Anglican theology, became an acclaimed naturalist and science writer following the five-year voyage of HMS Beagle. Using the notes and specimens that he had collected during the voyage, Darwin spent twenty years refining his theory, first published in 1859, of evolution by natural selection.


Episode Five: Mendel and the Eclipse of Darwin
Darwin's theory of descent with modification was accepted by most scientists worldwide within ten years of its publication in 1859. However, his theory of natural selection was widely criticized, and by the turn of the 20th century was widely considered to be dead. However, the work of Gregor Mendel, who discovered the foundations of what we now call genetics, provided a mechanism by which Darwin's theory could be revived and expanded.


Episode Six: The Evolving Synthesis
In the final segment of this series, we visit the The Museum of the Earth in Ithaca, New York, whose director, Dr. Warren Allman, discusses the importance of such museums to the science of evolutionary biology. We also hear from Cornell professor William Provine, who discusses Darwin's work and its importance to the history and philosophy of biology. He tells us how Darwin's original theory of natural selection was integrated into the sciences of population genetics, ecology, physiology, paleontology, embryology, and botany, to produce a "modern synthesis" of evolutionary theory. Prof. Provine also tells us how the "modern synthesis" has continued to evolve, and that today is the most exciting time yet in the history of Darwin's scientific revolution.

This has been an exciting year: the 200th anniversary of the publication of Lamarck's Philosophy Zoologique, the 200th anniversary of the birth of Charles Darwin, and the 150th anniversary of the publication of Darwin's Origin of Species. There have been many events marking these anniversaries, and there will be many more. As Will Provine says, the theory of evolution is more dynamic, more exciting, more widely accepted, and more widely applied than at any time in the past century and a half. With the accelerating pace of discoveries in evolutionary biology and their applications in biology, medicine, psychology, economics, and even literature and art, the 21st century shows all indications of being what the founders of the "modern synthesis" called it back in 1959: the "century of Darwin" and his theory of evolution by natural selection.

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As always, comments, criticisms, and suggestions are warmly welcomed!

--Allen

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Wednesday, November 04, 2009

Rescuing Darwin from His Detractors (and Supporters)


TITLE: Rescuing Darwin

AUTHOR: Paul Fayter

SOURCE: The United Church Observer

SUMMARY: Ever since the Origin of Species was first published 150 years ago, scientists and creationists have tried to spin the religious views of Charles Darwin their way.

COMMENTARY: This article by Paul Fayter (appearing on a website sponsored by The United Church Observer, a Christian organization) directly contradicts many of the assertions made by some evolutionary biologists and most ID supporters, including most of the egregious distortions in Benjamin Wiker's recent book,
The Darwin Myth: The Life and Lies of Charles Darwin.


Unlike Wiker and most ID supporters, Paul Fayter has spent a significant fraction of his professional life studying Charles Darwin and his work. Here's what he found:

- Darwin was not an atheist when he wrote the Origin of Species and therefore could not possibly have written it as an "apology" for his atheism;

- the most important factors in his eventual agnosticism were 1) the death of his daughter, Annie, and 2) his view that a benevolent deity would not have created a world with such horrors as parasites (and the indiscriminate death of innocents);

- that despite his agnosticism, Darwin remained a "practicing" member of both the Church of England and his local parish church;

- that despite his embrace of the science of evolutionary theory, he did not descend into a life of libertinism and immorality, nor did he distort his theory to support any political position (including eugenics or "social darwinism");

- he remained a dedicated scientist, a loving husband, a doting father, a devoted member of his parish, and an unwavering opponent of slavery and its concomitant evils; and

- he also remained what would now be considered to be a "theistic evolutionist" until his death.

Here is Faytor's conclusion:

Darwin was able to reconcile the power and glory of a good and loving God with nature's cold indifference and manifest cruelty - the infamous and pitiless "survival of the fittest" - by viewing struggle, pain, suffering and death not as the direct will of God but as the result of the impersonal operation of universal laws. The process of evolution by means of natural selection was deadly and wasteful, and yet, as Darwin concluded in The Origin, it had a higher, nobler purpose. Higher species would evolve. The Creator - the God of scientific theism - lawfully drew good out of evil and progress out of pain.

Near the end of his life, Darwin thought it impossible to conceive that "this immense and wonderful universe" was "the result of blind chance or necessity." No, it still seemed that the world had been willed into being. "I feel compelled to look to a First Cause having an intelligent mind in some degree analogous to that of man," he wrote in his autobiography, "and I deserve to be called a Theist." At the same time, Darwin believed that "the mystery of the beginning of all things" was simply unsolvable; and so he also declared, "I for one must be content to remain an agnostic."

All of this directly contradicts Wiker's biography of Darwin and the opinions of most ID supporters. Demonizing Darwin, especially when there are very good (and unbiased) biographies of Darwin (not to mention his own, very candid autobiography) does nothing to harm Darwin's scientific reputation. By contrast, the fundamental misunderstanding among many ID supporters of how real science is done does quite a bit to harm ID's scientific reputation.

Neither evolutionary biology nor ID will be advanced or forestalled as scientific enterprises by pro- or anti-hagiographies of Charles Darwin (or any other individual scientist or ID supporter). This will happen only when sufficient field and laboratory work has been done and the results published in reputable scientific journals to decide between them. So far ID supporters have chosen to pursue a political program and the vilification of world-renowned scientists, rather than do the requisite science. Until they decide to abandon ad hominem arguments and actually focus on the science, they will remain (like "scientific creationism") a cautionary footnote to the history of the triumph of evolutionary biology.

In closing, I find it quite significant that only ID supporters refer to Darwin as a "little God". Like all evolutionary biologists, I consider him to have been a dedicated and talented observer of nature and a genuinely good person, but (like all of us) a plain and simple (and, of course, fallible) human.

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As always, comments, criticisms, and suggestions are warmly welcomed!

--Allen

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Tuesday, February 17, 2009

Macroevolution: Examples and Evidence


AUTHOR: Allen MacNeill

SOURCE:
Observed Instances of Speciation


COMMENTARY: That's up to you...

In honor of Darwin’s birthday, here is a response to yet another unsupported assertion by creationists and ID supporters, who often state (without evidence) that although microevolution might happen, there is no evidence for macroevolution.

The distinction between microevolution – the mechanisms by which evolution has occurred – and
macroevolution
– the large-scale pattern of change over time that has resulted from the operation of microevolutionary mechanisms – is as old as evolutionary theory. In the Origin of Species, Darwin himself argued for both microevolution (i.e. natural and sexual selection) and macroevolution (descent with modification), without using these terms. Following the publication of the Origin, Darwin’s theory of descent with modification was quickly accepted by virtually the entire scientific community. However, his proposed mechanisms of natural and sexual selection were not as widely accepted as the “engines” of descent with modification, falling into disrepute by the turn of the 20th century.

However, the founders of the “modern evolutionary synthesis” rehabilitated Darwin’s microevolutionary mechanisms by integrating them with Mendel’s theory of genetics and new discoveries in botany, ecology, ethology, historical geology, and paleontology. So successful was this synthesis that today all but the most committed young-Earth creationists accept that microevolution happens. However, it has become an article of faith among anti-evolutionists of all denominations, including “intelligent design” supporters, that there is no scientific explanation for macroevolution, and that in the case of the origin of humans, it didn’t happen.

There isn’t enough room in this post to address both of these misconceptions, so I will concentrate here on the first: that there is no evidence that macroevolution has happened, and that therefore it didn’t happen (or if it did, it required supernatural intervention). What follows is a brief sample of some examples of macroevolution and the mechanisms by which they have taken place, from the level of species up to the level of whole kingdoms. This is not an exhaustive sample by any means. However, it should give anyone with an open mind enough examples and evidence to form their own conclusions about the validity of modern macroevolutionary theory.

[I am particularly indebted to Joseph Boxhorn’s essay on the evidences for speciation (located at talk.origins.org) from which I have drawn many of these examples. Please go there to read more about them.]

MACROEVOLUTION AT THE LEVEL OF SPECIES

PLANTS


While studying the genetics of the evening primrose, Oenothera lamarckiana, de Vries (1905) found an unusual variant among his plants. Oenothera lamarckiana has a chromosome number of 2N = 14. The variant had a chromosome number of 2N = 28. He found that he was unable to breed this variant with Oenothera lamarckiana. He named this new species Oenothera gigas.


Digby (1912) crossed the primrose species Primula verticillata and Primula floribunda to produce a sterile hybrid. Polyploidization occurred in a few of these plants to produce fertile offspring. The new species was named Primula kewensis. Newton and Pellew (1929) note that spontaneous hybrids of Primula verticillata and Primula floribunda set tetraploid seed on at least three occasions. These happened in 1905, 1923 and 1926.


Owenby (1950) demonstrated that two species in the genus Tragopogon were produced by polyploidization from hybrids. He showed that Tragopogon miscellus found in a colony in Moscow, Idaho was produced by hybridization of Tragopogon dubius and Tragopogon pratensis. He also showed that Tragopogon mirus found in a colony near Pullman, Washington was produced by hybridization of Tragopogon dubius and Tragopogon porrifolius. Evidence from chloroplast DNA suggests that Tragopogon mirus has originated independently by hybridization in eastern Washington and western Idaho at least three times (Soltis and Soltis 1989). The same study also shows multiple origins for Tragopogon micellus.


The Russian cytologist Karpchenko (1927, 1928) crossed the radish, Raphanus sativus, with the cabbage, Brassica oleracea. Despite the fact that the plants were in different genera, he got a sterile hybrid. Some unreduced gametes were formed in the hybrids. This allowed for the production of seed. Plants grown from the seeds were interfertile with each other. They were not interfertile with either parental species. Unfortunately the new plant (genus Raphanobrassica) had the foliage of a radish and the root of a cabbage.


A species of hemp nettle, Galeopsis tetrahit, was hypothesized to be the result of a natural hybridization of two other species, Galeopsis pubescens and Galeopsis speciosa (Muntzing 1932). The two species were crossed. The hybrids matched Galeopsis tetrahit in both visible features and chromosome morphology.


Clausen et al. (1945) hypothesized that Madia citrigracilis was a hexaploid hybrid of Madia gracilis and Madia citriodora. As evidence they noted that the species have gametic chromosome numbers of n = 24, 16 and 8 respectively. Crossing Madia gracilis and Madia citriodora resulted in a highly sterile triploid with n = 24. The chromosomes formed almost no bivalents during meiosis. Artificially doubling the chromosome number using colchecine produced a hexaploid hybrid which closely resembled Madia citrigracilis and was fertile.


Frandsen (1943, 1947) showed that Brassica carinata (n = 17) may be recreated by hybridizing Brassica nigra (n = 8) and Brassica oleracea, Brassica juncea (n = 18) may be recreated by hybridizing Brassica nigra and Brassica campestris (n = 10), and Brassica napus (n = 19) may be recreated by hybridizing Brassica oleracea and Brassica campestris.


Rabe and Haufler (1992) found a naturally occurring diploid sporophyte of maidenhair fern (Adiantum pedatum) which produced unreduced (2N) spores. These spores resulted from a failure of the paired chromosomes to dissociate during the first division of meiosis. The spores germinated normally and grew into diploid gametophytes. These did not appear to produce antheridia. Nonetheless, a subsequent generation of tetraploid sporophytes was produced. When grown in the lab, the tetraploid sporophytes appear to be less vigorous than the normal diploid sporophytes. The 4N individuals were found near Baldwin City, Kansas.


Woodsia Fern (Woodsia abbeae) was described as a hybrid of Woodsia cathcariana and Woodsia ilvensis (Butters 1941). Plants of this hybrid normally produce abortive sporangia containing inviable spores. In 1944 Butters found a Woodsia abbeae plant near Grand Portage, Minn. that had one fertile frond (Butters and Tryon 1948). The apical portion of this frond had fertile sporangia. Spores from this frond germinated and grew into prothallia. About six months after germination sporophytes were produced. They survived for about one year. Based on cytological evidence, Butters and Tryon concluded that the frond that produced the viable spores had gone tetraploid. They made no statement as to whether the sporophytes grown produced viable spores.


Gottlieb (1973) documented the speciation of Stephanomeria malheurensis. He found a single small population (< 250 plants) among a much larger population (> 25,000 plants) of Stephanomeria exigua in Harney Co., Oregon. Both species are diploid and have the same number of chromosomes (N = 8). Stephanomeria exigua is an obligate outcrosser exhibiting sporophytic self-incompatibility. Stephanomeria malheurensis exhibits no self-incompatibility and self-pollinates. Though the two species look very similar, Gottlieb was able to document morphological differences in five characters plus chromosomal differences. F1 hybrids between the species produces only 50% of the seeds and 24% of the pollen that conspecific crosses produced. F2 hybrids showed various developmental abnormalities.


Pasterniani (1969) produced almost complete reproductive isolation between two varieties of maize (Zea mays). The varieties were distinguishable by seed color, white versus yellow. Other genetic markers allowed him to identify hybrids. The two varieties were planted in a common field. Any plant's nearest neighbors were always plants of the other strain. Selection was applied against hybridization by using only those ears of corn that showed a low degree of hybridization as the source of the next years seed. Only parental type kernels from these ears were planted. The strength of selection was increased each year. In the first year, only ears with less than 30% intercrossed seed were used. In the fifth year, only ears with less than 1% intercrossed seed were used. After five years the average percentage of intercrossed matings dropped from 35.8% to 4.9% in the white strain and from 46.7% to 3.4% in the yellow strain.


At reasonably low concentrations, copper is toxic to many plant species. However, several plants have been seen to develop a tolerance to this metal (Macnair 1981). Macnair and Christie (1983) used this to examine the genetic basis of a postmating isolating mechanism in yellow monkey flower (Mimulus guttatus). When they crossed plants from the copper tolerant "Copperopolis" population with plants from the nontolerant "Cerig" population, they found that many of the hybrids were inviable. During early growth, just after the four leaf stage, the leaves of many of the hybrids turned yellow and became necrotic. Death followed this. This was seen only in hybrids between the two populations. Through mapping studies, the authors were able to show that the copper tolerance gene and the gene responsible for hybrid inviability were either the same gene or were very tightly linked. These results suggest that reproductive isolation may require changes in only a small number of genes.

ANIMALS

Speciation through hybridization and/or polyploidy is now considered to be as important in animals as it is in plants. (Lokki and Saura 1980; Bullini and Nascetti 1990; Vrijenhoek 1994). Bullini and Nasceti (1990) review chromosomal and genetic evidence that suggest that speciation through hybridization may occur in a number of insect species, including walking sticks, grasshoppers, blackflies and cucurlionid beetles. Lokki and Saura (1980) discuss the role of polyploidy in insect evolution. Vrijenhoek (1994) reviews the literature on parthenogenesis and hybridogenesis in fish.

Dobzhansky and Pavlovsky (1971) reported a speciation event that occurred in a laboratory culture of Drosophila paulistorum sometime between 1958 and 1963. The culture was descended from a single inseminated female that was captured in the Llanos of Colombia. In 1958 this strain produced fertile hybrids when crossed with conspecifics of different strains from Orinocan. From 1963 onward crosses with Orinocan strains produced only sterile males. Initially no assortative mating or behavioral isolation was seen between the Llanos strain and the Orinocan strains. Later on Dobzhansky produced assortative mating (Dobzhansky 1972).


Thoday and Gibson (1962) established a population of Drosophila melanogaster from four gravid females. They applied selection on this population for flies with the highest and lowest numbers of sternoplural chaetae (hairs). In each generation, eight flies with high numbers of chaetae were allowed to interbreed and eight flies with low numbers of chaetae were allowed to interbreed. Periodically they performed mate choice experiments on the two lines. They found that they had produced a high degree of positive assortative mating between the two groups. In the decade or so following this, eighteen labs attempted unsuccessfully to reproduce these results. References are given in Thoday and Gibson 1970.

Crossley (1974) was able to produce changes in mating behavior in two mutant strains of Drosophila melanogaster. Four treatments were used. In each treatment, 55 virgin males and 55 virgin females of both ebony body mutant flies and vestigial wing mutant flies (220 flies total) were put into a jar and allowed to mate for 20 hours. The females were collected and each was put into a separate vial. The phenotypes of the offspring were recorded. Wild type offspring were hybrids between the mutants. In two of the four treatments, mating was carried out in the light. In one of these treatments all hybrid offspring were destroyed. This was repeated for 40 generations. Mating was carried out in the dark in the other two treatments. Again, in one of these all hybrids were destroyed. This was repeated for 49 generations. Crossley ran mate choice tests and observed mating behavior. Positive assortative mating was found in the treatment which had mated in the light and had been subject to strong selection against hybridization. The basis of this was changes in the courtship behaviors of both sexes. Similar experiments, without observation of mating behavior, were performed by Knight, et al. (1956).

Kilias, et al. (1980) exposed Drosophila melanogaster populations to different temperature and humidity regimes for several years. They performed mating tests to check for reproductive isolation. They found some sterility in crosses among populations raised under different conditions. They also showed some positive assortative mating. These things were not observed in populations which were separated but raised under the same conditions. They concluded that sexual isolation was produced as a byproduct of selection.

In a series of papers (Rice 1985, Rice and Salt 1988 and Rice and Salt 1990) Rice and Salt presented experimental evidence for the possibility of sympatric speciation in Drosophila melanogaster. They started from the premise that whenever organisms sort themselves into the environment first and then mate locally, individuals with the same habitat preferences will necessarily mate assortatively. They established a stock population of Drosophila melanogaster with flies collected in an orchard near Davis, California. Pupae from the culture were placed into a habitat maze. Newly emerged flies had to negotiate the maze to find food. The maze simulated several environmental gradients simultaneously. The flies had to make three choices of which way to go. The first was between light and dark (phototaxis). The second was between up and down (geotaxis). The last was between the scent of acetaldehyde and the scent of ethanol (chemotaxis). This divided the flies among eight habitats. The flies were further divided by the time of day of emergence. In total the flies were divided among 24 spatio-temporal habitats.

They next cultured two strains of flies that had chosen opposite habitats. One strain emerged early, flew upward and was attracted to dark and acetaldehyde. The other emerged late, flew downward and was attracted to light and ethanol. Pupae from these two strains were placed together in the maze. They were allowed to mate at the food site and were collected. Eye color differences between the strains allowed Rice and Salt to distinguish between the two strains. A selective penalty was imposed on flies that switched habitats. Females that switched habitats were destroyed. None of their gametes passed into the next generation. Males that switched habitats received no penalty. After 25 generations of this mating tests showed reproductive isolation between the two strains. Habitat specialization was also produced.

They next repeated the experiment without the penalty against habitat switching. The result was the same -- reproductive isolation was produced. They argued that a switching penalty is not necessary to produce reproductive isolation. Their results, they stated, show the possibility of sympatric speciation.


In a series of experiments, del Solar (1966) derived positively and negatively geotactic and phototactic strains of Drosophila pseudoobscura from the same population by running the flies through mazes. Flies from different strains were then introduced into mating chambers (10 males and 10 females from each strain). Matings were recorded. Statistically significant positive assortative mating was found.

In a separate series of experiments Dodd (1989) raised eight populations derived from a single population of Drosophila pseudoobscura on stressful media. Four populations were raised on a starch based medium, the other four were raised on a maltose based medium. The fly populations in both treatments took several months to get established, implying that they were under strong selection. Dodd found some evidence of genetic divergence between flies in the two treatments. He performed mate choice tests among experimental populations. He found statistically significant assortative mating between populations raised on different media, but no assortative mating among populations raised within the same medium regime. He argued that since there was no direct selection for reproductive isolation, the behavioral isolation results from a pleiotropic by-product to adaptation to the two media. Schluter and Nagel (1995) have argued that these results provide experimental support for the hypothesis of parallel speciation.


Less dramatic results were obtained by growing Drosophila willistoni on media of different pH levels (de Oliveira and Cordeiro 1980). Mate choice tests after 26, 32, 52 and 69 generations of growth showed statistically significant assortative mating between some populations grown in different pH treatments. This ethological isolation did not always persist over time. They also found that some crosses made after 106 and 122 generations showed significant hybrid inferiority, but only when grown in acid medium.

Some proposed models of speciation rely on a process called reinforcement to complete the speciation process. Reinforcement occurs when to partially isolated allopatric populations come into contact. Lower relative fitness of hybrids between the two populations results in increased selection for isolating mechanisms. I should note that a recent review (Rice and Hostert 1993) argues that there is little experimental evidence to support reinforcement models. Two experiments in which the authors argue that their results provide support are discussed below.

Ehrman (1971) established strains of wild-type and mutant (black body) Drosophila melanogaster. These flies were derived from compound autosome strains such that heterotypic matings would produce no progeny. The two strains were reared together in common fly cages. After two years, the isolation index generated from mate choice experiments had increased from 0.04 to 0.43, indicating the appearance of considerable assortative mating. After four years this index had risen to 0.64 (Ehrman 1973). Along the same lines, Koopman (1950) was able to increase the degree of reproductive isolation between two partially isolated species, Drosophila pseudoobscura and Drosophila persimilis.

The founder-flush (a.k.a. flush-crash) hypothesis posits that genetic drift and founder effects play a major role in speciation (Powell 1978). During a founder-flush cycle a new habitat is colonized by a small number of individuals (e.g. one inseminated female). The population rapidly expands (the flush phase). This is followed by the population crashing. During this crash period the population experiences strong genetic drift. The population undergoes another rapid expansion followed by another crash. This cycle repeats several times. Reproductive isolation is produced as a byproduct of genetic drift.

Dodd and Powell (1985) tested this hypothesis using Drosophila pseudoobscura. A large, heterogeneous population was allowed to grow rapidly in a very large population cage. Twelve experimental populations were derived from this population from single pair matings. These populations were allowed to flush. Fourteen months later, mating tests were performed among the twelve populations. No postmating isolation was seen. One cross showed strong behavioral isolation. The populations underwent three more flush-crash cycles. Forty-four months after the start of the experiment (and fifteen months after the last flush) the populations were again tested. Once again, no postmating isolation was seen. Three populations showed behavioral isolation in the form of positive assortative mating. Later tests between 1980 and 1984 showed that the isolation persisted, though it was weaker in some cases.

Galina, et al. (1993) performed similar experiments with Drosophila pseudoobscura. Mating tests between populations that underwent flush-crash cycles and their ancestral populations showed 8 cases of positive assortative mating out of 118 crosses. They also showed 5 cases of negative assortative mating (i.e. the flies preferred to mate with flies of the other strain). Tests among the founder-flush populations showed 36 cases of positive assortative mating out of 370 crosses. These tests also found 4 cases of negative assortative mating. Most of these mating preferences did not persist over time. Galina, et al. concluded that the founder-flush protocol yields reproductive isolation only as a rare and erratic event.

Ahearn (1980) applied the founder-flush protocol to Drosophila silvestris. Flies from a line of this species underwent several flush-crash cycles. They were tested in mate choice experiments against flies from a continuously large population. Female flies from both strains preferred to mate with males from the large population. Females from the large population would not mate with males from the founder flush population. An asymmetric reproductive isolation was produced.

In a three year experiment, Ringo, et al. (1985) compared the effects of a founder-flush protocol to the effects of selection on various traits. A large population of Drosophila simulans was created from flies from 69 wild caught stocks from several locations. Founder-flush lines and selection lines were derived from this population. The founder-flush lines went through six flush-crash cycles. The selection lines experienced equal intensities of selection for various traits. Mating test were performed between strains within a treatment and between treatment strains and the source population. Crosses were also checked for postmating isolation. In the selection lines, 10 out of 216 crosses showed positive assortative mating (2 crosses showed negative assortative mating). They also found that 25 out of 216 crosses showed postmating isolation. Of these, 9 cases involved crosses with the source population. In the founder-flush lines 12 out of 216 crosses showed positive assortative mating (3 crosses showed negative assortative mating). Postmating isolation was found in 15 out of 216 crosses, 11 involving the source population. They concluded that only weak isolation was found and that there was little difference between the effects of natural selection and the effects of genetic drift.


Meffert and Bryant (1991) used houseflies (Musca domestica) to test whether bottlenecks in populations can cause permanent alterations in courtship behavior that lead to premating isolation. They collected over 100 flies of each sex from a landfill near Alvin, Texas. These were used to initiate an ancestral population. From this ancestral population they established six lines. Two of these lines were started with one pair of flies, two lines were started with four pairs of flies and two lines were started with sixteen pairs of flies. These populations were flushed to about 2,000 flies each. They then went through five bottlenecks followed by flushes. This took 35 generations. Mate choice tests were performed. One case of positive assortative mating was found. One case of negative assortative mating was also found.

Soans, et al. (1974) used houseflies (Musca domestica) to test Pimentel's model of speciation. This model posits that speciation requires two steps. The first is the formation of races in subpopulations. This is followed by the establishment of reproductive isolation. Houseflies were subjected to intense divergent selection on the basis of positive and negative geotaxis. In some treatments no gene flow was allowed, while in others there was 30% gene flow. Selection was imposed by placing 1000 flies into the center of a 108 cm vertical tube. The first 50 flies that reached the top and the first 50 flies that reached the bottom were used to found positively and negatively geotactic populations. Four populations were established:
Population A: positive geotaxis, no gene flow
Population B: negative geotaxis, no gene flow
Population C: positive geotaxis, 30% gene flow
Population D: negative geotaxis, 30% gene flow

Selection was repeated within these populations each generations. After 38 generations the time to collect 50 flies had dropped from 6 hours to 2 hours in Pop A, from 4 hours to 4 minutes in Pop B, from 6 hours to 2 hours in Pop C and from 4 hours to 45 minutes in Pop D. Mate choice tests were performed. Positive assortative mating was found in all crosses. They concluded that reproductive isolation occurred under both allopatric and sympatric conditions when very strong selection was present. Hurd and Eisenberg (1975) performed a similar experiment on houseflies using 50% gene flow and got the same results.

Recently there has been a lot of interest in whether the differentiation of an herbivorous or parasitic species into races living on different hosts can lead to sympatric speciation. It has been argued that in animals that mate on (or in) their preferred hosts, positive assortative mating is an inevitable byproduct of habitat selection (Rice 1985; Barton, et al. 1988). This would suggest that differentiated host races may represent incipient species.


The Apple Maggot Fly (Rhagoletis pomonella) is a fly that is native to North America. Its normal host is the hawthorn tree (Crataegus monogyna). Sometime during the nineteenth century it began to infest apple trees. Since then it has begun to infest cherries, roses, pears and possibly other members of the Rosaceae. Quite a bit of work has been done on the differences between flies infesting hawthorn and flies infesting apple. There appear to be differences in host preferences among populations. Offspring of females collected from on of these two hosts are more likely to select that host for oviposition (Prokopy et al. 1988). Genetic differences between flies on these two hosts have been found at 6 out of 13 allozyme loci (Feder et al. 1988, see also McPheron et al. 1988). Laboratory studies have shown an asynchrony in emergence time of adults between these two host races (Smith 1988). Flies from apple trees take about 40 days to mature, whereas flies from hawthorn trees take 54-60 days to mature. This makes sense when we consider that hawthorn fruit tends to mature later in the season that apples. Hybridization studies show that host preferences are inherited, but give no evidence of barriers to mating. This is a very exciting case. It may represent the early stages of a sympatric speciation event (considering the dispersal of Rhagoletis pomonella to other plants it may even represent the beginning of an adaptive radiation). It is important to note that some of the leading researchers on this question are urging caution in interpreting it. Feder and Bush (1989) stated:
"Hawthorn and apple "host races" of Rhagoletis pomonella may therefore represent incipient species. However, it remains to be seen whether host-associated traits can evolve into effective enough barriers to gene flow to result eventually in the complete reproductive isolation of Rhagoletis pomonella populations."



Gall Former Fly (Eurosta solidaginis) is a gall forming fly that is associated with goldenrod ( Solidago sp.) plants. It has two hosts: over most of its range it lays its eggs in Solidago altissima, but in some areas it uses Solidago gigantea as its host. Recent electrophoretic work has shown that the genetic distances among flies from different sympatric hosts species are greater than the distances among flies on the same host in different geographic areas (Waring et al. 1990). This same study also found reduced variability in flies on Solidago gigantea. This suggests that some Eurosta solidaginis have recently shifted hosts to this species. A recent study has compared reproductive behavior of the flies associated with the two hosts (Craig et al. 1993). They found that flies associated with Solidago gigantea emerge earlier in the season than flies associated with Solidago altissima. In host choice experiments, each fly strain ovipunctured its own host much more frequently than the other host.

Craig et al. (1993) also performed several mating experiments. When no host was present and females mated with males from either strain, if males from only one strain were present. When males of both strains were present, statistically significant positive assortative mating was seen. In the presence of a host, assortative mating was also seen. When both hosts and flies from both populations were present, females waited on the buds of the host that they are normally associated with. The males fly to the host to mate. This may represent the beginning of a sympatric speciation.


Halliburton and Gall (1981) established a population of flour beetles (Tribolium castaneum) collected in Davis, California. In each generation they selected the 8 lightest and the 8 heaviest pupae of each sex. When these 32 beetles had emerged, they were placed together and allowed to mate for 24 hours. Eggs were collected for 48 hours. The pupae that developed from these eggs were weighed at 19 days. This was repeated for 15 generations. The results of mate choice tests between heavy and light beetles was compared to tests among control lines derived from randomly chosen pupae. Positive assortative mating on the basis of size was found in 2 out of 4 experimental lines.


In 1964 five or six individuals of the polychaete worm, Nereis acuminata, were collected in Long Beach Harbor, California. These were allowed to grow into a population of thousands of individuals. Four pairs from this population were transferred to the Woods Hole Oceanographic Institute. For over 20 years these worms were used as test organisms in environmental toxicology. From 1986 to 1991 the Long Beach area was searched for populations of the worm. Two populations, P1 and P2, were found. Weinberg, et al. (1992) performed tests on these two populations and the Woods Hole population (WH) for both postmating and premating isolation. To test for postmating isolation, they looked at whether broods from crosses were successfully reared. The results below give the percentage of successful rearings for each group of crosses.
WH × WH = 75%
P1 × P1 = 95%
P2 × P2 = 80%
P1 × P2 = 77%
WH × P1 = 0%
WH × P2 = 0%

They also found statistically significant premating isolation between the WH population and the field populations. Finally, the Woods Hole population showed slightly different karyotypes from the field populations.

In some species the presence of intracellular bacterial parasites (or symbionts) is associated with postmating isolation. This results from a cytoplasmic incompatability between gametes from strains that have the parasite (or symbiont) and stains that don't. An example of this is seen in the mosquito Culex pipiens (Yen and Barr 1971). Compared to within strain matings, matings between strains from different geographic regions may may have any of three results: These matings may produce a normal number of offspring, they may produce a reduced number of offspring or they may produce no offspring. Reciprocal crosses may give the same or different results. In an incompatible cross, the egg and sperm nuclei fail to unite during fertilization. The egg dies during embryogenesis. In some of these strains, Yen and Barr (1971) found substantial numbers of Rickettsia-like microbes in adults, eggs and embryos. Compatibility of mosquito strains seems to be correlated with the strain of the microbe present. Mosquitoes that carry different strains of the microbe exhibit cytoplasmic incompatibility; those that carry the same strain of microbe are interfertile.

Similar phenomena have been seen in a number of other insects. Microoganisms are seen in the eggs of both Nasonia vitripennis and Nasonia giraulti. These two species do not normally hybridize. Following treatment with antibiotics, hybrids occur between them (Breeuwer and Werren 1990). In this case, the symbiont is associated with improper condensation of host chromosomes. For more examples and a critical review of this topic, see Thompson 1987.

MACROEVOLUTION ABOVE THE LEVEL OF SPECIES


Boraas (1983) reported the induction of multicellularity in a strain of Chlorella pyrenoidosa (since reclassified as Chlorella vulgaris) by predation. He was growing the unicellular green alga in the first stage of a two stage continuous culture system as for food for a flagellate predator, Ochromonas sp., that was growing in the second stage. Due to the failure of a pump, flagellates washed back into the first stage. Within five days a colonial form of the Chlorella appeared. It rapidly came to dominate the culture. The colony size ranged from 4 cells to 32 cells. Eventually it stabilized at 8 cells. This colonial form has persisted in culture for about a decade. The new form has been keyed out using a number of algal taxonomic keys. They key out now as being in the genus Coelosphaerium, which is in a different family from Chlorella.

Shikano, et al. (1990) reported that an unidentified bacterium underwent a major morphological change when grown in the presence of a ciliate predator. This bacterium's normal morphology is a short (1.5 um) rod. After 8 - 10 weeks of growing with the predator it assumed the form of long (20 um) cells. These cells have no cross walls. Filaments of this type have also been produced under circumstances similar to Boraas' induction of multicellularity in Chlorella. Microscopic examination of these filaments is described in Gillott et al. (1993). Multicellularity has also been produced in unicellular bacterial by predation (Nakajima and Kurihara 1994). In this study, growth in the presence of protozoal grazers resulted in the production of chains of bacterial cells.


The “species flock” of over 600 species of cichlid fish in Lake Victoria have all diverged within the past 15,000 years, according to Tijs Goldschmidt. Lake Victoria, the source of the Nile River in east Africa, was formed by block faulting in the African great rift valley. Geological evidence indicates that the lake was originally formed about 400,000 years ago, but dried out about 15,000 years ago. It subsequently refilled, and the 600+ species of cichlid fish have adaptively radiated during that period of time.

As the lake constitutes a single, although very large ecosystem, the adaptive radiation of the cichlid fish of Lake Victoria must be considered to have undergone a massive sympatric divergence. That this is the case is further supported by the observation that the extraordinary phenotypic variation seen among these fish has been accompanied by almost no genetic variation, except for a very small number of homeotic genes. Goldschmidt has suggested that the adaptive radiation of the cichlids of Lake Victoria has been driven by a combination of adaptation to a myriad of trophic niches, combined with sexual selection resulting from female choice (Goldschmidt, 1998).

MACROEVOLUTION AT THE LEVEL OF KINGDOMS


In 1970, Lynn Margulis proposed that the four kingdoms of eukaryotes (Protoctista, Fungi, Plantae, and Animalia, now combined in the domain Eukarya) originated from the endosymbiotic combination of four prokaryotic (i.e. bacterial) ancestors. The first step in this endosymbiotic partnership was the endosymbiotic incorporation of an aerobic bacterium with an acid-tolerant (probably Archaean) prokaryotic ancestor. The aerobic bacterium eventually evolved into what we now recognize as mitochondria. That this was the first step in the endosymbiotic origin of eukaryotes is supported by the observation that all eukaryotic cells (except such specialized cells as erythrocytes) have mitochondria, indicating that bacteria-derived mitochondria became associated with the ancestors of eukaryotes prior to the splitting of the eukaryotic clade into the plant, fungus, and animal kingdoms.

Margulis cites several lines of evidence supporting the hypothesis that mitochondria originated as endosymbiotic aerobic bacteria:

• Mitochondria have a double membrane. The outer membrane is very similar to the membrane of the vacuoles of eukaryotic cells, while the inner membrane is much more similar to the plasma membrane of bacteria.

• Like bacteria, mitochondria have circular DNA molecules, whereas the DNA molecules in the nuclear chromosomes of eukaryotes is linear.

• Also like bacteria, the circular DNA molecules of mitochondria are not complexed with histone proteins, whereas the linear DNA molecules in the chromosomes of the eukaryotic nucleus are tightly complexed with histone proteins.

• The DNA molecules of mitochondria (like the DNA of bacteria) do not include intron sequences, whereas the DNA molecules in the chromosomes of the eukaryotic nucleus generally include at least one, and often many intron sequences.

• Most of the genetic components of the mitochondrial genome, including such genetic “machinery” as promoter sequences and terminator sequences, are coded in the same way as in bacteria, and are significantly different from the genetic “machinery” in the DNA in the chromosomes of the eukaryotic nucleus.

•Mitochondria have their own ribosomes, which are virtually identical with bacterial ribosomes, but very different in size and structure from the ribosomes in the cytosol of eukaryotic cells.

• Mitochondria reproduce independently inside their host cells via binary fission, the same mechanism by which other bacteria reproduce, and very different from the process of mitosis by which eukaryotic cells divide.

The second step in the endosymbiotic origin of eukaryotes was the incorporation of motile, microtubule-containing bacteria similar to spirochaete bacteria into the mitochondrion-containing eukaryotic ancestor. Margulis proposed that these bacteria evolved into the cilia and flagella of eukaryotic cells (called undulapodia), which eventually evolved into the mitotic spindle apparatus by which all eukaryotic cells divide. She predicted that the basal bodies of cilia and flagella would have their own DNA, a prediction that was verified by researchers who (ironically) were trying to disprove her hypothesis. Another observation supporting Margulis’s hypothesis about the endosymbiotic origin of undulapodia is the fact that, like mitochondria, cilia and flagella reproduce independently of the cells to which they are attached, via a mechanism similar to binary fission. That the incorporation of spirochaete-like bacteria into the ancestors of all eukaryotes was the second step in the endosymbiotic origin of eukaryotes is supported by the observation that almost all eukaryotic cells (except a few very primitive species) reproduce via mitosis, indicating again that the undulapodia-derived spindle apparatus became associated with the ancestors of eukaryotes prior to the splitting of the eukaryotic clade into the plant, fungus, and animal kingdoms.

The final step in the endosymbiotic origin of eukaryotes was the incorporation of photosynthetic bacteria similar to cyanobacteria into the mitochondria-and-undulapodia-containing eukaryotic ancestor. These photosynthetic bacteria evolved into the chloroplasts of eukaryotic algae and plants. Like mitochondria, chloroplasts have a number of structural and functional similarities to photosynthetic bacteria that point to their endosymbiotic origin:
• Like mitochondria, chloroplasts have a double membrane. The outer membrane is very similar to the membrane of the vacuoles of eukaryotic cells, while the inner membrane is much more similar to the plasma membrane of bacteria.

• Like bacteria and mitochondria, chloroplasts have circular DNA molecules, whereas the DNA molecules in the nuclear chromosomes of eukaryotes is linear.

• Also like bacteria and mitochondria, the circular DNA molecules of chloroplasts are not complexed with histone proteins, whereas the linear DNA molecules in the chromosomes of the eukaryotic nucleus are tightly complexed with histone proteins.

• The DNA molecules of chloroplasts (like the DNA of bacteria and mitochondria) do not include intron sequences, whereas the DNA molecules in the chromosomes of the eukaryotic nucleus generally include at least one, and often many intron sequences.

• Most of the genetic components of the chloroplast genome, including such genetic “machinery” as promoter sequences and terminator sequences, are coded in the same way as in bacteria, and are significantly different from the genetic “machinery” in the DNA in the chromosomes of the eukaryotic nucleus.

•Like mitochondria, chloroplasts have their own ribosomes, which are virtually identical with bacterial ribosomes, but very different in size and structure from the ribosomes in the cytosol of eukaryotic cells.

• Like mitochondria, chloroplasts reproduce independently inside their host cells via binary fission, the same mechanism by which other bacteria reproduce, and very different from the process of mitosis by which eukaryotic cells divide.

• If separated from their eukaryotic host cells, chloroplasts can grow and reproduce on their own, looking and acting for all the world like photosynthetic bacteria.

That this was the final step in the endosymbiotic origin of eukaryotes is supported by the observation that only plant cells (and some protists) have chloroplasts, indicating that bacteria-derived chloroplasts became associated with the ancestors of eukaryotes after to the splitting of the eukaryotic clade into the plant, fungus, and animal kingdoms. This suggestion is strengthened by recent research indicating that fungi and animals are more closely related to each other than either are to plants, indicating that the split between photosynthetic eukaryotes (i.e. algae and plants) and heterotrophic eukaryotes (i.e. fungi and animals) happened before the incorporation of endosymbiotic photosynthetic bacteria in the ancestors of algae and plants.

REFERENCES CITED

Ahearn, J. N. 1980. Evolution of behavioral reproductive isolation in a laboratory stock of Drosophila silvestris. Experientia. 36:63-64.

Barton, N. H., J. S. Jones and J. Mallet. 1988. No barriers to speciation. Nature. 336:13-14.

Baum, D. 1992. Phylogenetic species concepts. Trends in Ecology and Evolution. 7:1-3.

Boraas, M. E. 1983. Predator induced evolution in chemostat culture. EOS. Transactions of the American Geophysical Union. 64:1102.

Breeuwer, J. A. J. and J. H. Werren. 1990. Microorganisms associated with chromosome destruction and reproductive isolation between two insect species. Nature. 346:558-560.

Budd, A. F. and B. D. Mishler. 1990. Species and evolution in clonal organisms -- a summary and discussion. Systematic Botany 15:166-171.

Bullini, L. and G. Nascetti. 1990. Speciation by hybridization in phasmids and other insects. Canadian Journal of Zoology. 68:1747-1760.

Butters, F. K. 1941. Hybrid Woodsias in Minnesota. Amer. Fern. J. 31:15-21.

Butters, F. K. and R. M. Tryon, jr. 1948. A fertile mutant of a Woodsia hybrid. American Journal of Botany. 35:138.

Brock, T. D. and M. T. Madigan. 1988. Biology of Microorganisms (5th edition). Prentice Hall, Englewood, NJ.

Callaghan, C. A. 1987. Instances of observed speciation. The American Biology Teacher. 49:3436.

Castenholz, R. W. 1992. Species usage, concept, and evolution in the cyanobacteria (blue-green algae). Journal of Phycology 28:737-745.

Clausen, J., D. D. Keck and W. M. Hiesey. 1945. Experimental studies on the nature of species. II. Plant evolution through amphiploidy and autoploidy, with examples from the Madiinae. Carnegie Institute Washington Publication, 564:1-174.

Cracraft, J. 1989. Speciation and its ontology: the empirical consequences of alternative species concepts for understanding patterns and processes of differentiation. In Otte, E. and J. A. Endler [eds.] Speciation and its consequences. Sinauer Associates, Sunderland, MA. pp. 28-59.

Craig, T. P., J. K. Itami, W. G. Abrahamson and J. D. Horner. 1993. Behavioral evidence for host-race fromation in Eurosta solidaginis. Evolution. 47:1696-1710.

Cronquist, A. 1978. Once again, what is a species? Biosystematics in agriculture. Beltsville Symposia in Agricultural Research 2:3-20.

Cronquist, A. 1988. The evolution and classification of flowering plants (2nd edition). The New York Botanical Garden, Bronx, NY.

Crossley, S. A. 1974. Changes in mating behavior produced by selection for ethological isolation between ebony and vestigial mutants of Drosophilia melanogaster. Evolution. 28:631-647.

de Oliveira, A. K. and A. R. Cordeiro. 1980. Adaptation of Drosophila willistoni experimental populations to extreme pH medium. II. Development of incipient reproductive isolation. Heredity. 44:123-130.

de Queiroz, K. and M. Donoghue. 1988. Phylogenetic systematics and the species problem. Cladistics. 4:317-338.

de Queiroz, K. and M. Donoghue. 1990. Phylogenetic systematics and species revisited. Cladistics. 6:83-90.

de Vries, H. 1905. Species and varieties, their origin by mutation.

de Wet, J. M. J. 1971. Polyploidy and evolution in plants. Taxon. 20:29-35.

del Solar, E. 1966. Sexual isolation caused by selection for positive and negative phototaxis and geotaxis in Drosophila pseudoobscura. Proceedings of the National Academy of Sciences (US). 56:484-487.

Digby, L. 1912. The cytology of Primula kewensis and of other related Primula hybrids. Ann. Bot. 26:357-388.

Dobzhansky, T. 1937. Genetics and the origin of species. Columbia University Press, New York.

Dobzhansky, T. 1951. Genetics and the origin of species (3rd edition). Columbia University Press, New York.

Dobzhansky, T. and O. Pavlovsky. 1971. Experimentally created incipient species of Drosophila. Nature. 230:289-292.

Dobzhansky, T. 1972. Species of Drosophila: new excitement in an old field. Science. 177:664-669.

Dodd, D. M. B. 1989. Reproductive isolation as a consequence of adaptive divergence in Drosophila melanogaster. Evolution 43:1308-1311.

Dodd, D. M. B. and J. R. Powell. 1985. Founder-flush speciation: an update of experimental results with Drosophila. Evolution 39:1388-1392.

Donoghue, M. J. 1985. A critique of the biological species concept and recommendations for a phylogenetic alternative. Bryologist 88:172-181.

Du Rietz, G. E. 1930. The fundamental units of biological taxonomy. Svensk. Bot. Tidskr. 24:333-428.

Ehrman, E. 1971. Natural selection for the origin of reproductive isolation. The American Naturalist. 105:479-483.

Ehrman, E. 1973. More on natural selection for the origin of reproductive isolation. The American Naturalist. 107:318-319.

Feder, J. L., C. A. Chilcote and G. L. Bush. 1988. Genetic differentiation between sympatric host races of the apple maggot fly, Rhagoletis pomonella. Nature. 336:61-64.

Feder, J. L. and G. L. Bush. 1989. A field test of differential host-plant usage between two sibling species of Rhagoletis pomonella fruit flies (Diptera:Tephritidae) and its consequences for sympatric models of speciation. Evolution 43:1813-1819.

Frandsen, K. J. 1943. The experimental formation of Brassica juncea Czern. et Coss. Dansk. Bot. Arkiv., No. 4, 11:1-17.

Frandsen, K. J. 1947. The experimental formation of Brassica napus L. var. oleifera DC and Brassica carinata Braun. Dansk. Bot. Arkiv., No. 7, 12:1-16.

Galiana, A., A. Moya and F. J. Alaya. 1993. Founder-flush speciation in Drosophila pseudoobscura: a large scale experiment. Evolution. 47432-444.

Goldschmidt, T. (1998) Darwin’s Dreampond: Drama in Lake Victoria. MIT Press, Cambridge, MA, 274 pp.

Gottleib, L. D. 1973. Genetic differentiation, sympatric speciation, and the origin of a diploid species of Stephanomeira. American Journal of Botany. 60: 545-553.

Halliburton, R. and G. A. E. Gall. 1981. Disruptive selection and assortative mating in Tribolium castaneum. Evolution. 35:829-843.

Hurd, L. E., and R. M. Eisenberg. 1975. Divergent selection for geotactic response and evolution of reproductive isolation in sympatric and allopatric populations of houseflies. The American Naturalist. 109:353-358.

Karpchenko, G. D. 1927. Polyploid hybrids of Raphanus sativus L. X Brassica oleraceae L. Bull. Appl. Botany. 17:305-408.

Karpchenko, G. D. 1928. Polyploid hybrids of Raphanus sativus L. X Brassica oleraceae L. Z. Indukt. Abstami-a Verenbungsi. 48:1-85.

Kilias, G., S. N. Alahiotis and M. Delecanos. 1980. A multifactorial investigation of speciation theory using Drosophila melanogaster. Evolution. 34:730-737.

Knight, G. R., A. Robertson and C. H. Waddington. 1956. Selection for sexual isolation within a species. Evolution. 10:14-22.

Koopman, K. F. 1950. Natural selection for reproductive isolation between Drosophila pseudoobscura and Drosophila persimilis. Evolution. 4:135-148.

Lee, R. E. 1989. Phycology (2nd edition) Cambridge University Press, Cambridge, UK

Levin, D. A. 1979. The nature of plant species. Science 204:381-384.

Lokki, J. and A. Saura. 1980. Polyploidy in insect evolution. In: W. H. Lewis (ed.) Polyploidy: Biological Relevance. Plenum Press, New York.

Macnair, M. R. 1981. Tolerance of higher plants to toxic materials. In: J. A. Bishop and L. M. Cook (eds.). Genetic consequences of man made change. Pp.177-297. Academic Press, New York.

Macnair, M. R. and P. Christie. 1983. Reproductive isolation as a pleiotropic effect of copper tolerance in Mimulus guttatus. Heredity. 50:295-302.

Manhart, J. R. and R. M. McCourt. 1992. Molecular data and species concepts in the algae. Journal of Phycology. 28:730-737.

Margulis, Lynn, 1970, Origin of Eukaryotic Cells, Yale University Press, ISBN 0-300-01353-1

Margulis, Lynn, ed, 1991, Symbiosis as a Source of Evolutionary Innovation: Speciation and Morphogenesis, The MIT Press, ISBN 0-262-13269-9

Margulis, Lynn and Dorion Sagan, 2002, Acquiring Genomes: A Theory of the Origins of Species, Perseus Books Group, ISBN 0-465-04391-7

Mayr, E. 1942. Systematics and the origin of species from the viewpoint of a zoologist. Columbia University Press, New York.

Mayr, E. 1982. The growth of biological thought: diversity, evolution and inheritance. Harvard University Press, Cambridge, MA.

McCourt, R. M. and R. W. Hoshaw. 1990. Noncorrespondence of breeding groups, morphology and monophyletic groups in Spirogyra (Zygnemataceae; Chlorophyta) and the application of species concepts. Systematic Botany. 15:69-78.

McPheron, B. A., D. C. Smith and S. H. Berlocher. 1988. Genetic differentiation between host races of Rhagoletis pomonella. Nature. 336:64-66.

Meffert, L. M. and E. H. Bryant. 1991. Mating propensity and courtship behavior in serially bottlenecked lines of the housefly. Evolution 45:293-306.

Mishler, B. D. 1985. The morphological, developmental and phylogenetic basis of species concepts in the bryophytes. Bryologist. 88:207-214.

Mishler, B. D. and M. J. Donoghue. 1982. Species concepts: a case for pluralism. Systematic Zoology. 31:491-503.

Muntzing, A. 1932. Cytogenetic investigations on the synthetic Galeopsis tetrahit. Hereditas. 16:105-154.

Nelson, G. 1989. Cladistics and evolutionary models. Cladistics. 5:275-289.

Newton, W. C. F. and C. Pellew. 1929. Primula kewensis and its derivatives. J. Genetics. 20:405-467.

Otte, E. and J. A. Endler (eds.). 1989. Speciation and its consequences. Sinauer Associates. Sunderland, MA.

Owenby, M. 1950. Natural hybridization and amphiploidy in the genus Tragopogon. Am. J. Bot. 37:487-499.

Pasterniani, E. 1969. Selection for reproductive isolation between two populations of maize, Zea mays L. Evolution. 23:534-547.

Powell, J. R. 1978. The founder-flush speciation theory: an experimental approach. Evolution. 32:465-474.

Prokopy, R. J., S. R. Diehl, and S. H. Cooley. 1988. Oecologia. 76:138.

Rabe, E. W. and C. H. Haufler. 1992. Incipient polyploid speciation in the maidenhair fern (Adiantum pedatum, adiantaceae)? American Journal of Botany. 79:701-707.

Rice, W. R. 1985. Disruptive selection on habitat preference and the evolution of reproductive isolation: an exploratory experiment. Evolution. 39:645-646.

Rice, W. R. and E. E. Hostert. 1993. Laboratory experiments on speciation: What have we learned in forty years? Evolution. 47:1637-1653.

Rice, W. R. and G. W. Salt. 1988. Speciation via disruptive selection on habitat preference: experimental evidence. The American Naturalist. 131:911-917.

Rice, W. R. and G. W. Salt. 1990. The evolution of reproductive isolation as a correlated character under sympatric conditions: experimental evidence. Evolution. 44:1140-1152.

Ringo, J., D. Wood, R. Rockwell, and H. Dowse. 1989. An experiment testing two hypotheses of speciation. The American Naturalist. 126:642-661.

Schluter, D. and L. M. Nagel. 1995. Parallel speciation by natural selection. American Naturalist. 146:292-301.

Shikano, S., L. S. Luckinbill and Y. Kurihara. 1990. Changes of traits in a bacterial population associated with protozoal predation. Microbial Ecology. 20:75-84.

Smith, D. C. 1988. Heritable divergence of Rhagoletis pomonella host races by seasonal asynchrony. Nature. 336:66-67.

Soans, A. B., D. Pimentel and J. S. Soans. 1974. Evolution of reproductive isolation in allopatric and sympatric populations. The American Naturalist. 108:117-124.

Sokal, R. R. and T. J. Crovello. 1970. The biological species concept: a critical evaluation. The American Naturalist. 104:127-153.

Soltis, D. E. and P. S. Soltis. 1989. Allopolyploid speciation in Tragopogon: Insights from chloroplast DNA. American Journal of Botany. 76:1119-1124.

Stuessy, T. F. 1990. Plant taxonomy. Columbia University Press, New York.

Thoday, J. M. and J. B. Gibson. 1962. Isolation by disruptive selection. Nature. 193:1164-1166.

Thoday, J. M. and J. B. Gibson. 1970. The probability of isolation by disruptive selection. The American Naturalist. 104:219-230.

Thompson, J. N. 1987. Symbiont-induced speciation. Biological Journal of the Linnean Society. 32:385-393.

Vrijenhoek, R. C. 1994. Unisexual fish: Model systems for studying ecology and evolution. Annual Review of Ecology and Systematics. 25:71-96.

Waring, G. L., W. G. Abrahamson and D. J. Howard. 1990. Genetic differentiation in the gall former Eurosta solidaginis (Diptera:Tephritidae) along host plant lines. Evolution. 44:1648-1655.

Weinberg, J. R., V. R. Starczak and P. Jora. 1992. Evidence for rapid speciation following a founder event in the laboratory. Evolution. 46:1214-1220.

Wood, A. M. and T. Leatham. 1992. The species concept in phytoplankton ecology. Journal of Phycology. 28:723-729.

Yen, J. H. and A. R. Barr. 1971. New hypotheses of the cause of cytoplasmic incompatability in Culex pipiens L.

As always, comments, criticisms, and suggestions are warmly welcomed!

--Allen

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